Goblin_Wizard, I'm having trouble with InoCo's path in Zebos, right after the Ternie mission storyline. Posting this here instead of in the "InoCo path fix" thread, because this script (mission 14e_1, check GreyOnes_e_Zebos.script) isn't in that fix but it's in your mod. I glanced through it but there's quite a few changes in there.

When I enter Zebos there's no line showing which station I need to dock at. The mission log shows 1 quest, "Reach Zebos." (Active), and below it is something like meet SAM at the central station. If I portal out back to Gaeon, the mission log has changed. Now it shows mission title is "Not found string: #L_QUEST_14E_01A" (Active), and below it is "Not found string: #L_QUEST_14E_01B".

I flew a Silver Arrow mothership for most of the game. During the Ternie mission storyline I let it get replaced with SAM's Manticore - that's the final mothership for this storyline right? I'm still flying that Manticore, didn't change it. Right now I have 5 pilots (Hero, Greyhair, Jana, SAM Copy, Kalem), and a mothership firmware pilot (Bryna&KT). I hired Bryna&KT long ago back when I got the repainted Mastiff, together when I bought the Silver Arrow. The other pilots were all from the storyline.

Dunno if it's relevant, but previously when I obtained SAM Copy I took him to Zebos and attacked the berserks there to get him some exp. I don't know if that has any effect on the later missions.